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| virtual void | endElement (const XMLCh *const , const XMLCh *const , const XMLCh *const qname) |
| | Parsing method for closing tags. More...
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| |
| virtual void | startElement (const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes) |
| | Parsing method for opening tags. More...
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| |
| virtual void | characters (const XMLCh *const chars, const XMLSize_t length) |
| | Parsing method for character data. More...
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| |
| virtual void | writeTo (std::ostream &os) |
| | Writes the contents to a stream. More...
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| |
|
| | TraMLHandler (const TargetedExperiment &exp, const String &filename, const String &version, const ProgressLogger &logger) |
| | Constructor for a write-only handler. More...
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| |
| | TraMLHandler (TargetedExperiment &exp, const String &filename, const String &version, const ProgressLogger &logger) |
| | Constructor for a read-only handler. More...
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| |
| virtual | ~TraMLHandler () |
| | Destructor. More...
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| |
Public Member Functions inherited from XMLHandler |
| | XMLHandler (const String &filename, const String &version) |
| | Default constructor. More...
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| |
| virtual | ~XMLHandler () |
| | Destructor. More...
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| |
| void | reset () |
| | Release internal memory used for parsing (call. More...
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| |
| void | fatalError (ActionMode mode, const String &msg, UInt line=0, UInt column=0) const |
| | Fatal error handler. Throws a ParseError exception. More...
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| |
| void | error (ActionMode mode, const String &msg, UInt line=0, UInt column=0) const |
| | Error handler for recoverable errors. More...
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| |
| void | warning (ActionMode mode, const String &msg, UInt line=0, UInt column=0) const |
| | Warning handler. More...
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| |
| String | errorString () |
| | Returns the last error description. More...
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| |
| void | fatalError (const xercesc::SAXParseException &exception) |
| |
| void | error (const xercesc::SAXParseException &exception) |
| |
| void | warning (const xercesc::SAXParseException &exception) |
| |
|
| void | handleCVParam_ (const String &parent_parent_tag, const String &parent_tag, const CVTerm &cv_term) |
| | Handles CV terms. More...
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| |
| void | handleUserParam_ (const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value) |
| | Handles user terms. More...
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| |
| void | writeUserParam_ (std::ostream &os, const MetaInfoInterface &meta, UInt indent) const |
| | Writes user terms. More...
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| |
| void | writeUserParams_ (std::ostream &os, const std::vector< MetaInfoInterface > &meta, UInt indent) const |
| |
| void | writeCVParams_ (std::ostream &os, const CVTermList &cv_terms, UInt indent) const |
| |
| void | writeTarget_ (std::ostream &os, const std::vector< IncludeExcludeTarget >::const_iterator &it) const |
| |
| void | writeProduct_ (std::ostream &os, const std::vector< ReactionMonitoringTransition::Product >::const_iterator &prod_it) const |
| |
| void | writeConfiguration_ (std::ostream &os, const std::vector< ReactionMonitoringTransition::Configuration >::const_iterator &cit) const |
| |
| ControlledVocabulary::CVTerm | getChildWithName_ (const String &parent_accession, const String &name) const |
| | Looks up a child CV term of parent_accession with the name name. If no such term is found, an empty term is returned. More...
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| |
Protected Member Functions inherited from XMLHandler |
| bool | equal_ (const XMLCh *a, const XMLCh *b) |
| | Returns if two xerces strings are equal. More...
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| |
| void | writeUserParam_ (const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const |
| | Writes the content of MetaInfoInterface to the file. More...
|
| |
| Int | asInt_ (const String &in) |
| | Conversion of a String to an integer value. More...
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| |
| Int | asInt_ (const XMLCh *in) |
| | Conversion of a Xerces string to an integer value. More...
|
| |
| UInt | asUInt_ (const String &in) |
| | Conversion of a String to an unsigned integer value. More...
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| |
| double | asDouble_ (const String &in) |
| | Conversion of a String to a double value. More...
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| |
| float | asFloat_ (const String &in) |
| | Conversion of a String to a float value. More...
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| |
| bool | asBool_ (const String &in) |
| | Conversion of a string to a boolean value. More...
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| |
| DateTime | asDateTime_ (String date_string) |
| | Conversion of a xs:datetime string to a DataTime value. More...
|
| |
| char * | attributeAsString_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to a String. More...
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| |
| Int | attributeAsInt_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to a Int. More...
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| |
| DoubleReal | attributeAsDouble_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to a DoubleReal. More...
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| |
| DoubleList | attributeAsDoubleList_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to a DoubleList. More...
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| |
| IntList | attributeAsIntList_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to an IntList. More...
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| |
| StringList | attributeAsStringList_ (const xercesc::Attributes &a, const char *name) const |
| | Converts an attribute to an StringList. More...
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| |
| bool | optionalAttributeAsString_ (String &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the String value if the attribute is present. More...
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| |
| bool | optionalAttributeAsInt_ (Int &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the Int value if the attribute is present. More...
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| |
| bool | optionalAttributeAsUInt_ (UInt &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the UInt value if the attribute is present. More...
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| |
| bool | optionalAttributeAsDouble_ (DoubleReal &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the DoubleReal value if the attribute is present. More...
|
| |
| bool | optionalAttributeAsDoubleList_ (DoubleList &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the DoubleList value if the attribute is present. More...
|
| |
| bool | optionalAttributeAsStringList_ (StringList &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the StringList value if the attribute is present. More...
|
| |
| bool | optionalAttributeAsIntList_ (IntList &value, const xercesc::Attributes &a, const char *name) const |
| | Assigns the attribute content to the IntList value if the attribute is present. More...
|
| |
| char * | attributeAsString_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a String. More...
|
| |
| Int | attributeAsInt_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a Int. More...
|
| |
| DoubleReal | attributeAsDouble_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a DoubleReal. More...
|
| |
| DoubleList | attributeAsDoubleList_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a DoubleList. More...
|
| |
| IntList | attributeAsIntList_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a IntList. More...
|
| |
| StringList | attributeAsStringList_ (const xercesc::Attributes &a, const XMLCh *name) const |
| | Converts an attribute to a StringList. More...
|
| |
| bool | optionalAttributeAsString_ (String &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the String value if the attribute is present. More...
|
| |
| bool | optionalAttributeAsInt_ (Int &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the Int value if the attribute is present. More...
|
| |
| bool | optionalAttributeAsUInt_ (UInt &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the UInt value if the attribute is present. More...
|
| |
| bool | optionalAttributeAsDouble_ (DoubleReal &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the DoubleReal value if the attribute is present. More...
|
| |
| bool | optionalAttributeAsDoubleList_ (DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the DoubleList value if the attribute is present. More...
|
| |
| bool | optionalAttributeAsIntList_ (IntList &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the IntList value if the attribute is present. More...
|
| |
| bool | optionalAttributeAsStringList_ (StringList &value, const xercesc::Attributes &a, const XMLCh *name) const |
| | Assigns the attribute content to the StringList value if the attribute is present. More...
|
| |
| SignedSize | cvStringToEnum_ (const Size section, const String &term, const char *message, const SignedSize result_on_error=0) |
| |
XML handler for TraMLFile.
- Note
- Do not use this class. It is only needed in TraMLFile.