#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FTPeakDetectController.h>
Public Types | |
| typedef std::pair< double, boost::shared_ptr< RawData > > | Map |
| typedef std::vector< Map > | Vec |
Private Attributes | |
| LCMS * | lcms_ |
| std::vector< LCMS > | lcmsRuns_ |
| std::string | targetMzXML |
| std::string | SOURCE_DIR |
| std::string | OUTPUT_DIR |
| FTPeakDetectController | ( | const FTPeakDetectController & | ) |
| void add_raw_peak_to_LC_MS_run | ( | LCElutionPeak * | ) |
| void addFakeMSMSToFeature | ( | SHFeature * | ) |
| void addLCelutionProfile | ( | SHFeature * | , |
| LCElutionPeak * | |||
| ) |
| void addMS2FeatureToMS1Feature | ( | MS2Feature * | , |
| SHFeature * | |||
| ) |
| void associateMS2FeatureToMS1Feature | ( | MS2Feature * | ) |
| bool checkIfFeatureExtractionExists | ( | std::string | ) |
| void constructMS1FeatureFromMS2Feature | ( | MS2Feature * | ) |
| void extract_MS2_elution_features | ( | ) |
|
inline |
References FTPeakDetectController::targetMzXML.
|
inline |
References FTPeakDetectController::lcms_.
| FTPeakDetectController& operator< | ( | const FTPeakDetectController & | ) |
| FTPeakDetectController& operator<= | ( | const FTPeakDetectController & | ) |
| FTPeakDetectController& operator= | ( | const FTPeakDetectController & | ) |
| FTPeakDetectController& operator> | ( | const FTPeakDetectController & | ) |
| FTPeakDetectController& operator>= | ( | const FTPeakDetectController & | ) |
| void parseMzXMLData | ( | ) |
| void process_MS1_level_data_structure | ( | ProcessData * | ) |
| void process_MS2_level_data_structure | ( | ProcessData * | ) |
|
inline |
References FTPeakDetectController::targetMzXML.
| void startScanParsing | ( | Vec | datavec | ) |
| void write_out_parsed_LC_MS | ( | LCMS * | ) |
|
private |
Referenced by FTPeakDetectController::getLCMS().
|
private |
|
private |
|
private |
|
private |
Referenced by FTPeakDetectController::get_target_file(), and FTPeakDetectController::set_target_file().
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:35 using doxygen 1.8.5 |